課程資訊
課程名稱
進階植物基因體學
Advanced Plant Genomics 
開課學期
108-2 
授課對象
生物資源暨農學院  農藝學系  
授課教師
黃永芬 
課號
Agron7035 
課程識別碼
621EM2080 
班次
 
學分
2.0 
全/半年
半年 
必/選修
選修 
上課時間
星期三8,9(15:30~17:20) 
上課地點
農藝304 
備註
本課程以英語授課。先修科目:基因體,分子生物學,生物資訊學.與邢禹依合授
總人數上限:20人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/1082Agron7035 
課程簡介影片
 
核心能力關聯
核心能力與課程規劃關聯圖
課程大綱
為確保您我的權利,請尊重智慧財產權及不得非法影印
課程概述

Genome science is integrated into a large variety of life science research, enabling plant scientists to gain insights on the cause of phenotypic variation, species evolution, crop domestication, etc. Understanding genome organization and evolution has been shown as an effective way to design strategies for gene discovery, functional studies, as well as for crop breeding. Indeed, the outcome of a genome project is not only the series of nucleotide sequences, but also the history, biology and possible applications that the sequence data tell us. This course aims to provide students an integrative view of plant genomics through the presentation of various genomics-related topics.

We invite genomic researchers to share with us the first-hand stories on plant genomics:
Lecturers (alphabetical order):
1. Chen, Pao-Yang 陳柏仰 (Institute of Plant and Microbial Biology, Academia Sinica)
2. Hsing, Yue-Ie 邢禹依 (Institute of Plant and Microbial Biology, Academia Sinica)
3. Huang, Yung-Fen 黃永芬 (Department of Agronomy, National Taiwan University)
4. Kuo, Chih-Horng 郭志鴻 (Institute of Plant and Microbial Biology, Academia Sinica)
5. Lin, Jer-Young 林哲揚 (Biotechnology Center in Southern Taiwan, Academia Sinica)
6. Lin, Shih-Shun 林詩舜 (Institute of Biotechnology, National Taiwan University)
7. Lin, Yao-Cheng 林耀正 (Biotechnology Center in Southern Taiwan, Academia Sinica)
 

課程目標
This course aims to provide students an integrative view on plant genomics, updates on plant genomics, as well as to train students to think by themselves. 
課程要求
Students having studied plant genomics, molecular biology, and/or bioinformatics are welcome. Students’ interactive participation is required. 
預期每週課後學習時數
 
Office Hours
備註: Upon appointment 
指定閱讀
 
參考書目
The list of research and review papers will be given at each course presentation. 
評量方式
(僅供參考)
   
課程進度
週次
日期
單元主題
第1週
3/04  Introduction/Review of the basics [Huang, Yung-Fen] 
第2週
3/11  Genomics of plant-associated bacteria [Kuo, Chih-Horng] 
第3週
3/18  Comparative genomics [Lin, Yao-Cheng] 
第4週
3/25  Genome-wide DNA methylation in plants and fungi [Chen, Pao-Yang] 
第5週
4/01  Transposable elements [Huang, Yung-Fen] 
第6週
4/08  Small RNA [Lin, Shih-Shun] 
第7週
4/15  Brachypodium genomics [Huang, Yung-Fen] 
第8週
4/22  Rice genomics (I) [Hsing, Yue-Ie] 
第9週
4/29  Rice genomics (II) [Hsing, Yue-Ie] 
第10週
5/06  Special cases for functional genomics studies (I) [Hsing, Yue-Ie] 
第11週
5/13  Special cases for functional genomics studies (II) [Hsing, Yue-Ie] 
第12週
5/20  Seed genomics [Lin, Jer-Young] 
第13週
5/27  Population genomics [Huang, Yung-Fen] 
第14週
6/03  Paleogenomics [Huang, Yung-Fen] 
第15週
6/10  Final term 
第16週
6/17  Genomics applied to breeding [Huang, Yung-Fen]